Research output per year
Research output per year
- 1 - 50 out of 968 results
Search results
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2023
Automatic Detection and Measurement of Renal Cysts in Ultrasound Images: A Deep Learning Approach
Kanauchi, Y., Hashimoto, M., Toda, N., Okamoto, S., Haque, H., Jinzaki, M. & Sakakibara, Y., 2023 Feb, In: Healthcare (Switzerland). 11, 4, 484.Research output: Contribution to journal › Article › peer-review
Open Access1 Citation (Scopus) -
Column-free purification of an artificial protein nanocage, TIP60
Nasu, E., Kawakami, N., Ohara, N., Hayashi, K. & Miyamoto, K., 2023 May, In: Protein Expression and Purification. 205, 106232.Research output: Contribution to journal › Article › peer-review
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Distribution changes of non-self-test cells and self-tunic cells surrounding the outer body during Ciona metamorphosis
Totsuka, N. M., Kuwana, S., Sawai, S., Oka, K., Sasakura, Y. & Hotta, K., 2023 Nov, In: Developmental Dynamics. 252, 11, p. 1363-1374 12 p.Research output: Contribution to journal › Article › peer-review
Open Access1 Citation (Scopus) -
Dual Modification of Artificial Protein Cage
Kawakami, N., Nasu, E. & Miyamoto, K., 2023, Methods in Molecular Biology. Humana Press Inc., p. 147-156 10 p. (Methods in Molecular Biology; vol. 2671).Research output: Chapter in Book/Report/Conference proceeding › Chapter
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Effect of the side chain composition of mixed-charge polymers on pH-selective cell–membrane interactions
Nakamura, Y., Nasu, M., Shindo, Y., Oka, K., Citterio, D. & Hiruta, Y., 2023 Nov, In: Polymer Journal. 55, 11, p. 1179-1188 10 p.Research output: Contribution to journal › Article › peer-review
1 Citation (Scopus) -
Endocytosis-Like Vesicle Fission Mediated by a Membrane-Expanding Molecular Machine Enables Virus Encapsulation for In Vivo Delivery
Uchida, N., Ryu, Y., Takagi, Y., Yoshizawa, K., Suzuki, K., Anraku, Y., Ajioka, I., Shimokawa, N., Takagi, M., Hoshino, N., Akutagawa, T., Matsubara, T., Sato, T., Higuchi, Y., Ito, H., Morita, M. & Muraoka, T., 2023 Mar 22, In: Journal of the American Chemical Society. 145, 11, p. 6210-6220 11 p.Research output: Contribution to journal › Article › peer-review
Open Access1 Citation (Scopus) -
High-density scalp electroencephalogram dataset during sensorimotor rhythm-based brain-computer interfacing
Iwama, S., Morishige, M., Kodama, M., Takahashi, Y., Hirose, R. & Ushiba, J., 2023 Dec, In: Scientific Data. 10, 1, 385.Research output: Contribution to journal › Article › peer-review
Open Access -
Hydrophobization of a TIP60 Protein Nanocage for the Encapsulation of Hydrophobic Compounds
Yamashita, M., Kawakami, N. & Miyamoto, K., 2023 Mar, In: ChemPlusChem. 88, 3, e202200392.Research output: Contribution to journal › Article › peer-review
Open Access -
Modulation of sensorimotor oscillation by sensory gating in the frontal cortex
Fujiwara, Y., Takahashi, O. & Ushiba, J., 2023 Jan 14, In: NeuroReport. 34, 1, p. 9-16 8 p.Research output: Contribution to journal › Article › peer-review
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Quantum Algorithm for Position Weight Matrix Matching
Miyamoto, K., Yamamoto, N. & Sakakibara, Y., 2023, In: IEEE Transactions on Quantum Engineering. 4, 3101214.Research output: Contribution to journal › Article › peer-review
Open Access -
Reversible Assembly of an Artificial Protein Nanocage Using Alkaline Earth Metal Ions
Ohara, N., Kawakami, N., Arai, R., Adachi, N., Moriya, T., Kawasaki, M. & Miyamoto, K., 2023 Jan 11, In: Journal of the American Chemical Society. 145, 1, p. 216-223 8 p.Research output: Contribution to journal › Article › peer-review
2 Citations (Scopus) -
Revisiting oxytocin generation in keratinocytes
Fujimoto, K., Inada, K., Oka, K. & Ito, E., 2023, In: Biophysics and physicobiology. 20, 1, e200003.Research output: Contribution to journal › Article › peer-review
Open Access -
RNA Secondary Structure Prediction Based on Energy Models
Akiyama, M. & Sato, K., 2023, Methods in Molecular Biology. Humana Press Inc., p. 89-105 17 p. (Methods in Molecular Biology; vol. 2586).Research output: Chapter in Book/Report/Conference proceeding › Chapter
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The sialyl-Tn antigen synthase genes regulates migration–proliferation dichotomy in prostate cancer cells under hypoxia
Yamamoto, D., Hongo, H., Kosaka, T., Aoki, N., Oya, M. & Sato, T., 2023 Apr, In: Glycoconjugate Journal. 40, 2, p. 199-212 14 p.Research output: Contribution to journal › Article › peer-review
1 Citation (Scopus) -
Thirty-minute motor imagery exercise aided by EEG sensorimotor rhythm neurofeedback enhances morphing of sensorimotor cortices: a double-blind sham-controlled study
Kodama, M., Iwama, S., Morishige, M. & Ushiba, J., 2023 Jun 1, In: Cerebral Cortex. 33, 11, p. 6573-6584 12 p.Research output: Contribution to journal › Article › peer-review
3 Citations (Scopus) -
Titanium Culture Vessel Presenting Temperature Gradation for the Thermotolerance Estimation of Cells
Imashiro, C., Jin, Y., Hayama, M., Yamada, T. G., Funahashi, A., Sakaguchi, K., Umezu, S. & Komotori, J., 2023, In: Cyborg and Bionic Systems. 4, 0049.Research output: Contribution to journal › Article › peer-review
Open Access -
Transitions of motor neuron activities during Ciona development
Utsumi, M. K., Oka, K. & Hotta, K., 2023 Jan 13, In: Frontiers in Cell and Developmental Biology. 11, 1100887.Research output: Contribution to journal › Article › peer-review
Open Access2 Citations (Scopus) -
2022
Accelerated transgene expression of pDNA/polysaccharide complexes by solid-phase reverse transfection and analysis of the cell transfection mechanism
Arai, T., Aiki, Y. & Sato, T., 2022 Apr, In: Polymer Journal. 54, 4, p. 603-613 11 p.Research output: Contribution to journal › Article › peer-review
2 Citations (Scopus) -
A Comparison of Bioinformatics Pipelines for Enrichment Illumina Next Generation Sequencing Systems in Detecting SARS-CoV-2 Virus Strains
Afiahayati, Bernard, S., Gunadi, Wibawa, H., Hakim, M. S., Marcellus, Parikesit, A. A., Dewa, C. K. & Sakakibara, Y., 2022 Aug, In: Genes. 13, 8, 1330.Research output: Contribution to journal › Article › peer-review
Open Access -
Admp regulates tail bending by controlling ventral epidermal cell polarity via phosphorylated myosin localization in Ciona
Kogure, Y. S., Muraoka, H., Koizumi, W. C., Gelin-Alessi, R., Godard, B., Oka, K., Heisenberg, C. P. & Hotta, K., 2022 Nov, In: Development (Cambridge). 149, 21, dev200215.Research output: Contribution to journal › Article › peer-review
Open Access -
AI and computational chemistry-accelerated development of an alotaketal analogue with conventional PKC selectivity
Maki, J., Oshimura, A., Tsukano, C., Yanagita, R. C., Saito, Y., Sakakibara, Y. & Irie, K., 2022 May 18, In: Chemical Communications. 58, 47, p. 6693-6696 4 p.Research output: Contribution to journal › Article › peer-review
5 Citations (Scopus) -
An explainable deep learning-based algorithm with an attention mechanism for predicting the live birth potential of mouse embryos
Tokuoka, Y., Yamada, T. G., Mashiko, D., Ikeda, Z., Kobayashi, T. J., Yamagata, K. & Funahashi, A., 2022 Dec, In: Artificial Intelligence in Medicine. 134, 102432.Research output: Contribution to journal › Article › peer-review
Open Access -
Annual rhythmicity in the switching of reproductive mode in planarians
Nodono, H. & Matsumoto, M., 2022 Dec, In: Zoology. 155, 126053.Research output: Contribution to journal › Article › peer-review
Open Access -
Beta rhythmicity in human motor cortex reflects neural population coupling that modulates subsequent finger coordination stability
Iwama, S., Yanagisawa, T., Hirose, R. & Ushiba, J., 2022 Dec, In: Communications biology. 5, 1, 1375.Research output: Contribution to journal › Article › peer-review
Open Access1 Citation (Scopus) -
BioSimulators: a central registry of simulation engines and services for recommending specific tools
Shaikh, B., Smith, L. P., Vasilescu, D., Marupilla, G., Wilson, M., Agmon, E., Agnew, H., Andrews, S. S., Anwar, A., Beber, M. E., Bergmann, F. T., Brooks, D., Brusch, L., Calzone, L., Choi, K., Cooper, J., Detloff, J., Drawert, B., Dumontier, M., Ermentrout, G. B., & 55 others, 2022 Jul 5, In: Nucleic acids research. 50, W1, p. W108-W114Research output: Contribution to journal › Article › peer-review
Open Access6 Citations (Scopus) -
Brain-machine Interface (BMI)-based Neurorehabilitation for Post-stroke Upper Limb Paralysis
Liu, M. & Ushiba, J., 2022, In: Keio Journal of Medicine. 71, 4, p. 82-92 11 p.Research output: Contribution to journal › Review article › peer-review
Open Access4 Citations (Scopus) -
Cell-Size Space Regulates the Behavior of Confined Polymers: From Nano- and Micromaterials Science to Biology
Yanagisawa, M., Watanabe, C., Yoshinaga, N. & Fujiwara, K., 2022 Oct 4, In: Langmuir. 38, 39, p. 11811-11827 17 p.Research output: Contribution to journal › Review article › peer-review
5 Citations (Scopus) -
Characterization of the membrane penetration-enhancing peptide S19 derived from human syncytin-1 for the intracellular delivery of TAT-fused proteins
Suzuki, M., Iwaki, K., Kikuchi, M., Fujiwara, K. & Doi, N., 2022 Jan 1, In: Biochemical and Biophysical Research Communications. 586, p. 63-67 5 p.Research output: Contribution to journal › Article › peer-review
Open Access5 Citations (Scopus) -
Controlling the Periodicity of a Reaction-Diffusion Wave in Artificial Cells by a Two-Way Energy Supplier
Takada, S., Yoshinaga, N., Doi, N. & Fujiwara, K., 2022 Oct 25, In: ACS Nano. 16, 10, p. 16853-16861 9 p.Research output: Contribution to journal › Article › peer-review
3 Citations (Scopus) -
Counterfactual Explanation of Brain Activity Classifiers Using Image-To-Image Transfer by Generative Adversarial Network
Matsui, T., Taki, M., Pham, T. Q., Chikazoe, J. & Jimura, K., 2022 Mar 16, In: Frontiers in Neuroinformatics. 15, 802938.Research output: Contribution to journal › Article › peer-review
Open Access3 Citations (Scopus) -
Cytoplasmic delivery of siRNA using human-derived membrane penetration-enhancing peptide
Nakamura, M., Fujiwara, K. & Doi, N., 2022 Dec, In: Journal of Nanobiotechnology. 20, 1, 458.Research output: Contribution to journal › Article › peer-review
Open Access -
Deep Residual Convolutional Neural Networks for Brain–Computer Interface to Visualize Neural Processing of Hand Movements in the Human Brain
Fujiwara, Y. & Ushiba, J., 2022 May 20, In: Frontiers in Computational Neuroscience. 16, 882290.Research output: Contribution to journal › Article › peer-review
Open Access4 Citations (Scopus) -
De Novo Brain-Computer Interfacing Deforms Manifold of Populational Neural Activity Patterns in Human Cerebral Cortex
Iwama, S., Zhang, Y. & Ushiba, J., 2022 Nov 1, In: eNeuro. 9, 6, ENEURO.0145-22.2022.Research output: Contribution to journal › Article › peer-review
Open Access -
De Novo Design of Star-Shaped Glycoligands with Synthetic Polymer Structures toward an Influenza Hemagglutinin Inhibitor
Nagao, M., Yamaguchi, A., Matsubara, T., Hoshino, Y., Sato, T. & Miura, Y., 2022 Mar 14, In: Biomacromolecules. 23, 3, p. 1232-1241 10 p.Research output: Contribution to journal › Article › peer-review
1 Citation (Scopus) -
Description of a model tardigrade Paramacrobiotus metropolitanus sp. nov. (Eutardigrada) from Japan with a summary of its life history, reproduction and genomics
Sugiura, K., Matsumoto, M. & Kunieda, T., 2022 May 9, In: Zootaxa. 5134, 1, p. 92-112 21 p.Research output: Contribution to journal › Article › peer-review
6 Citations (Scopus) -
Detection of Influenza Virus by Agglutination of Microparticles Immobilized a Mixed Glycan Receptor Produced from Cells
Matsubara, T., Ogami, A., Kori, H., Hashizume, M. & Sato, T., 2022, (Accepted/In press) In: ACS Applied Bio Materials.Research output: Contribution to journal › Article › peer-review
1 Citation (Scopus) -
Development of non-bias phenotypic drug screening for cardiomyocyte hypertrophy by image segmentation using deep learning
Komuro, J., Tokuoka, Y., Seki, T., Kusumoto, D., Hashimoto, H., Katsuki, T., Nakamura, T., Akiba, Y., Kuoka, T., Kimura, M., Yamada, T., Fukuda, K., Funahashi, A. & Yuasa, S., 2022 Dec 3, In: Biochemical and Biophysical Research Communications. 632, p. 181-188 8 p.Research output: Contribution to journal › Article › peer-review
1 Citation (Scopus) -
Dihydromaniwamycin E, a Heat-Shock Metabolite from Thermotolerant Streptomyces sp. JA74, Exhibiting Antiviral Activity against Influenza and SARS-CoV-2 Viruses
Saito, S., Funayama, K., Kato, W., Okuda, M., Kawamoto, M., Matsubara, T., Sato, T., Sato, A., Otsuguro, S., Sasaki, M., Orba, Y., Sawa, H., Maenaka, K., Shindo, K., Imoto, M. & Arai, M. A., 2022 Nov 25, In: Journal of Natural Products. 85, 11, p. 2583-2591 9 p.Research output: Contribution to journal › Article › peer-review
Open Access1 Citation (Scopus) -
Direct Inference of Base-Pairing Probabilities with Neural Networks Improves Prediction of RNA Secondary Structures with Pseudoknots
Akiyama, M., Sakakibara, Y. & Sato, K., 2022 Nov 18, In: Genes. 13, 11, 2155.Research output: Contribution to journal › Article › peer-review
Open Access2 Citations (Scopus) -
Dorsolateral prefrontal cortex sensing analgesia
Ito, E., Oka, K. & Koshikawa, F., 2022, In: Biophysics and physicobiology. 19, e190014.Research output: Contribution to journal › Article › peer-review
Open Access5 Citations (Scopus) -
Effective Cell Transfection in An Ultrasonically Levitated Droplet for Sustainable Technology
Arai, T., Sato, T. & Matsubara, T., 2022 Oct 25, In: Advanced Science. 9, 30, 2203576.Research output: Contribution to journal › Article › peer-review
Open Access4 Citations (Scopus) -
Erratum: Two Bioactive Compounds, Uniformides A and B, Isolated from a Culture of Nocardia uniformis IFM0856Tin the Presence of Animal Cells (Organic Letters (2022) 24:27 (4998-5002) DOI: 10.1021/acs.orglett.2c02092)
Hara, Y., Watanabe, K., Takaya, A., Ebihara, I., Manome, T., Arai, M. A., Yaguchi, T. & Ishibashi, M., 2022 Aug 12, In: Organic Letters. 24, 31, p. 5867 1 p.Research output: Contribution to journal › Comment/debate › peer-review
Open Access -
Executive control by fronto-parietal activity explains counterintuitive decision behavior in complex value-based decision-making
Matsui, T., Hattori, Y., Tsumura, K., Aoki, R., Takeda, M., Nakahara, K. & Jimura, K., 2022 Apr 1, In: NeuroImage. 249, 118892.Research output: Contribution to journal › Article › peer-review
Open Access5 Citations (Scopus) -
Functional analysis of GCNT3 for cell migration and EMT of castration-resistant prostate cancer cells
Yamamoto, D., Sasaki, K., Kosaka, T., Oya, M. & Sato, T., 2022 Sept 19, In: Glycobiology. 32, 10, p. 897-908 12 p.Research output: Contribution to journal › Article › peer-review
2 Citations (Scopus) -
Functional reorganization of locomotor kinematic synergies reflects the neuropathology in a mouse model of spinal cord injury
Sato, Y., Kondo, T., Shibata, R., Nakamura, M., Okano, H. & Ushiba, J., 2022 Apr, In: Neuroscience Research. 177, p. 78-84 7 p.Research output: Contribution to journal › Article › peer-review
Open Access -
Ganglioside Nanocluster-Targeting Peptidyl Inhibitor Prevents Amyloid β Fibril Formation on the Neuronal Membrane
Matsubara, T., Nakai, M., Nishihara, M., Miyamoto, E. & Sato, T., 2022 Jul 6, In: ACS Chemical Neuroscience. 13, 13, p. 1868-1876 9 p.Research output: Contribution to journal › Article › peer-review
2 Citations (Scopus) -
Generation of Fusarium oxysporum-suppressive soil with non-soil carriers using a multiple-parallel-mineralization technique
Meeboon, J., Ando, A., Ogawa, J., Miyamoto, K., Kato, Y. & Shinohara, M., 2022 Dec, In: Scientific reports. 12, 1, 7968.Research output: Contribution to journal › Article › peer-review
Open Access -
Graph Kernels Encoding Features of All Subgraphs by Quantum Superposition
Kishi, K., Satoh, T., Raymond, R., Yamamoto, N. & Sakakibara, Y., 2022 Sept 1, In: IEEE Journal on Emerging and Selected Topics in Circuits and Systems. 12, 3, p. 602-613 12 p.Research output: Contribution to journal › Article › peer-review
Open Access2 Citations (Scopus) -
Guanine nucleotide exchange factor DOCK11-binding peptide fused with a single chain antibody inhibits hepatitis B virus infection and replication
Ide, M., Tabata, N., Yonemura, Y., Shirasaki, T., Murai, K., Wang, Y., Ishida, A., Okada, H., Honda, M., Kaneko, S., Doi, N., Ito, S. & Yanagawa, H., 2022 Jul, In: Journal of Biological Chemistry. 298, 7, 102097.Research output: Contribution to journal › Article › peer-review
Open Access6 Citations (Scopus) -
High quality genome assembly of the anhydrobiotic midge provides insights on a single chromosome-based emergence of extreme desiccation tolerance
Yoshida, Y., Shaikhutdinov, N., Kozlova, O., Itoh, M., Tagami, M., Murata, M., Nishiyori-Sueki, H., Kojima-Ishiyama, M., Noma, S., Cherkasov, A., Gazizova, G., Nasibullina, A., Deviatiiarov, R., Shagimardanova, E., Ryabova, A., Yamaguchi, K., Bino, T., Shigenobu, S., Tokumoto, S., Miyata, Y., & 6 others, 2022 Jun 1, In: NAR Genomics and Bioinformatics. 4, 2, lqac029.Research output: Contribution to journal › Article › peer-review
Open Access3 Citations (Scopus)