A comprehensive software suite for the analysis of cDNAs

Kazuharu Arakawa; Haruo Suzuki; Kosuke Fujishima; Kenji Fujimoto; Sho Ueda; Motomu Matsui; Masaru Tomita

doi:10.1016/S1672-0229(05)03023-8

A comprehensive software suite for the analysis of cDNAs

Kazuharu Arakawa, Haruo Suzuki, Kosuke Fujishima, Kenji Fujimoto, Sho Ueda, Motomu Matsui, Masaru Tomita

Research output: Contribution to journal › Article › peer-review

1 Citation (Scopus)

Abstract

We have developed a comprehensive software suite for bioinformatics research of cDNAs; it is aimed at rapid characterization of the features of genes and the proteins they code. Methods implemented include the detection of translation initiation and termination signals, statistical analysis of codon usage, comparative study of amino acid composition, comparative modeling of the structures of product proteins, prediction of alternative splice forms, and metabolic pathway reconstruction.

Original language	English
Pages (from-to)	179-188
Number of pages	10
Journal	Genomics, Proteomics and Bioinformatics
Volume	3
Issue number	3
DOIs	https://doi.org/10.1016/S1672-0229(05)03023-8
Publication status	Published - 2005 Aug

Keywords

Bioinformatics
Software
cDNA

ASJC Scopus subject areas

Biochemistry
Molecular Biology
Genetics
Computational Mathematics

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10.1016/S1672-0229(05)03023-8

Cite this

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title = "A comprehensive software suite for the analysis of cDNAs",

abstract = "We have developed a comprehensive software suite for bioinformatics research of cDNAs; it is aimed at rapid characterization of the features of genes and the proteins they code. Methods implemented include the detection of translation initiation and termination signals, statistical analysis of codon usage, comparative study of amino acid composition, comparative modeling of the structures of product proteins, prediction of alternative splice forms, and metabolic pathway reconstruction.",

keywords = "Bioinformatics, Software, cDNA",

author = "Kazuharu Arakawa and Haruo Suzuki and Kosuke Fujishima and Kenji Fujimoto and Sho Ueda and Motomu Matsui and Masaru Tomita",

note = "Funding Information: This research was supported by the Japan Society for the Promotion of Science (JSPS) and a grant from the Ministry of Education, Culture, Sports, Science and Technology of Japan (The 21 st Century COE Program).",

year = "2005",

month = aug,

doi = "10.1016/S1672-0229(05)03023-8",

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journal = "Genomics, Proteomics and Bioinformatics",

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TY - JOUR

T1 - A comprehensive software suite for the analysis of cDNAs

AU - Arakawa, Kazuharu

AU - Suzuki, Haruo

AU - Fujishima, Kosuke

AU - Fujimoto, Kenji

AU - Ueda, Sho

AU - Matsui, Motomu

AU - Tomita, Masaru

N1 - Funding Information: This research was supported by the Japan Society for the Promotion of Science (JSPS) and a grant from the Ministry of Education, Culture, Sports, Science and Technology of Japan (The 21 st Century COE Program).

PY - 2005/8

Y1 - 2005/8

N2 - We have developed a comprehensive software suite for bioinformatics research of cDNAs; it is aimed at rapid characterization of the features of genes and the proteins they code. Methods implemented include the detection of translation initiation and termination signals, statistical analysis of codon usage, comparative study of amino acid composition, comparative modeling of the structures of product proteins, prediction of alternative splice forms, and metabolic pathway reconstruction.

AB - We have developed a comprehensive software suite for bioinformatics research of cDNAs; it is aimed at rapid characterization of the features of genes and the proteins they code. Methods implemented include the detection of translation initiation and termination signals, statistical analysis of codon usage, comparative study of amino acid composition, comparative modeling of the structures of product proteins, prediction of alternative splice forms, and metabolic pathway reconstruction.

KW - Bioinformatics

KW - Software

KW - cDNA

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AN - SCOPUS:33645122070

SN - 1672-0229

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JO - Genomics, Proteomics and Bioinformatics

JF - Genomics, Proteomics and Bioinformatics

IS - 3

ER -

A comprehensive software suite for the analysis of cDNAs

Abstract

Keywords

ASJC Scopus subject areas

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