TY - JOUR
T1 - Application of reference-modified density functional theory
T2 - Temperature and pressure dependences of solvation free energy
AU - Sumi, Tomonari
AU - Maruyama, Yutaka
AU - Mitsutake, Ayori
AU - Mochizuki, Kenji
AU - Koga, Kenichiro
N1 - Funding Information:
[a] T. Sumi, K. Mochizuki, K. Koga Division of Superconducting and Functional Materials, Research Institute for Interdisciplinary Science, Okayama University, 3-1-1 Tsushima-Naka, Kita-ku, Okayama 700-8530, Japan E-mail: sumi@okayama-u.ac.jp [b] T. Sumi, K. Koga Department of Chemistry, Faculty of Science, Okayama University, 3-1-1 Tsushima-Naka, Kita-ku, Okayama 700-8530, Japan [c] Y. Maruyama Co-Design Team, FLAGSHIP 2020 Project, RIKEN Advanced Institute for Computational Science, 7-1-26, Minatojima-minami-machi, Kobe 650-0047, Japan [d] A. Mitsutake Department of Physics, Keio University, 3-14-1 Hiyoshi, Kohoku-ku, Yokohama, Kanagawa 223–8522, Japan Contract grant sponsor: Japan Society for the Promotion of Science KAKENHI; Contract grant numbers: JP25610121, JP16K05657, JP15H05474, and JP26287099; Contract grant sponsor: PRESTO, JST; Contract grant number: JPMJPR13LB VC 2017 Wiley Periodicals, Inc.
Publisher Copyright:
© 2017 Wiley Periodicals, Inc.
PY - 2018/2/5
Y1 - 2018/2/5
N2 - Recently, we proposed a reference-modified density functional theory (RMDFT) to calculate solvation free energy (SFE), in which a hard-sphere fluid was introduced as the reference system instead of an ideal molecular gas. Through the RMDFT, using an optimal diameter for the hard-sphere reference system, the values of the SFE calculated at room temperature and normal pressure were in good agreement with those for more than 500 small organic molecules in water as determined by experiments. In this study, we present an application of the RMDFT for calculating the temperature and pressure dependences of the SFE for solute molecules in water. We demonstrate that the RMDFT has high predictive ability for the temperature and pressure dependences of the SFE for small solute molecules in water when the optimal reference hard-sphere diameter determined for each thermodynamic condition is used. We also apply the RMDFT to investigate the temperature and pressure dependences of the thermodynamic stability of an artificial small protein, chignolin, and discuss the mechanism of high-temperature and high-pressure unfolding of the protein.
AB - Recently, we proposed a reference-modified density functional theory (RMDFT) to calculate solvation free energy (SFE), in which a hard-sphere fluid was introduced as the reference system instead of an ideal molecular gas. Through the RMDFT, using an optimal diameter for the hard-sphere reference system, the values of the SFE calculated at room temperature and normal pressure were in good agreement with those for more than 500 small organic molecules in water as determined by experiments. In this study, we present an application of the RMDFT for calculating the temperature and pressure dependences of the SFE for solute molecules in water. We demonstrate that the RMDFT has high predictive ability for the temperature and pressure dependences of the SFE for small solute molecules in water when the optimal reference hard-sphere diameter determined for each thermodynamic condition is used. We also apply the RMDFT to investigate the temperature and pressure dependences of the thermodynamic stability of an artificial small protein, chignolin, and discuss the mechanism of high-temperature and high-pressure unfolding of the protein.
KW - 3D-RISM theory
KW - chignolin
KW - classical density functional theory
KW - high-pressure unfolding
KW - hydrophobic solute
KW - protein
KW - temperature and pressure dependences of solvation free energy
KW - thermal denaturation
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U2 - 10.1002/jcc.25101
DO - 10.1002/jcc.25101
M3 - Article
AN - SCOPUS:85033565824
SN - 0192-8651
VL - 39
SP - 202
EP - 217
JO - Journal of Computational Chemistry
JF - Journal of Computational Chemistry
IS - 4
ER -