Configuring area and performance: Empirical evaluation on an FPGA-based biochemical simulator

T. Ooya; H. Yamada; T. Ishimori; Y. Shibata; Y. Osana; K. Oguri; M. Yoshimi; Y. Nishikawa; A. Funahashi; N. Hiroi; H. Amano

doi:10.1109/FPL.2009.5272335

Configuring area and performance: Empirical evaluation on an FPGA-based biochemical simulator

T. Ooya, H. Yamada, T. Ishimori, Y. Shibata, Y. Osana, K. Oguri, M. Yoshimi, Y. Nishikawa, A. Funahashi, N. Hiroi, H. Amano

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

2 Citations (Scopus)

Abstract

One of the obvious advantages of FPGA-based reconfigurable computing is customizability of a tradeoff point between performance and hardware costs. However, this trade-off has rarely been discussed in a whole application level, which is the most important view for application users. This paper presents empirical evaluation of a hardware module sharing technique which can shift a tradeoff point of area and performance on an FPGA-based biochemical simulator. The biochemical simulation results are discussed in terms of hardware costs, simulation throughput, parallelism extracted in simulation hardware, and data transfer overheads.

Original language	English
Title of host publication	FPL 09
Subtitle of host publication	19th International Conference on Field Programmable Logic and Applications
Pages	679-682
Number of pages	4
DOIs	https://doi.org/10.1109/FPL.2009.5272335
Publication status	Published - 2009 Nov 25
Event	FPL 09: 19th International Conference on Field Programmable Logic and Applications - Prague, Czech Republic Duration: 2009 Aug 31 → 2009 Sept 2

Publication series

Name	FPL 09: 19th International Conference on Field Programmable Logic and Applications

Other

Other	FPL 09: 19th International Conference on Field Programmable Logic and Applications
Country/Territory	Czech Republic
City	Prague
Period	09/8/31 → 09/9/2

ASJC Scopus subject areas

Computational Theory and Mathematics
Computer Science Applications

Access to Document

10.1109/FPL.2009.5272335

Cite this

Ooya, T., Yamada, H., Ishimori, T., Shibata, Y., Osana, Y., Oguri, K., Yoshimi, M., Nishikawa, Y., Funahashi, A., Hiroi, N., & Amano, H. (2009). Configuring area and performance: Empirical evaluation on an FPGA-based biochemical simulator. In FPL 09: 19th International Conference on Field Programmable Logic and Applications (pp. 679-682). Article 5272335 (FPL 09: 19th International Conference on Field Programmable Logic and Applications). https://doi.org/10.1109/FPL.2009.5272335

Configuring area and performance: Empirical evaluation on an FPGA-based biochemical simulator. / Ooya, T.; Yamada, H.; Ishimori, T. et al.
FPL 09: 19th International Conference on Field Programmable Logic and Applications. 2009. p. 679-682 5272335 (FPL 09: 19th International Conference on Field Programmable Logic and Applications).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Ooya, T, Yamada, H, Ishimori, T, Shibata, Y, Osana, Y, Oguri, K, Yoshimi, M, Nishikawa, Y, Funahashi, A, Hiroi, N & Amano, H 2009, Configuring area and performance: Empirical evaluation on an FPGA-based biochemical simulator. in FPL 09: 19th International Conference on Field Programmable Logic and Applications., 5272335, FPL 09: 19th International Conference on Field Programmable Logic and Applications, pp. 679-682, FPL 09: 19th International Conference on Field Programmable Logic and Applications, Prague, Czech Republic, 09/8/31. https://doi.org/10.1109/FPL.2009.5272335

Ooya T, Yamada H, Ishimori T, Shibata Y, Osana Y, Oguri K et al. Configuring area and performance: Empirical evaluation on an FPGA-based biochemical simulator. In FPL 09: 19th International Conference on Field Programmable Logic and Applications. 2009. p. 679-682. 5272335. (FPL 09: 19th International Conference on Field Programmable Logic and Applications). doi: 10.1109/FPL.2009.5272335

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Configuring area and performance: Empirical evaluation on an FPGA-based biochemical simulator

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