TY - JOUR
T1 - Detection of Anomalous Dynamics for a Single Water Molecule
AU - Tomobe, Katsufumi
AU - Yasuoka, Kenji
N1 - Funding Information:
*K. Tomobe. E-mail: katsufumi@keio.jp. *K. Yasuoka. E-mail: yasuoka@mech.keio.ac.jp. ORCID Katsufumi Tomobe: 0000-0002-3663-1870 Author Contributions K.T. and K.Y. designed the project. K.T. performed simulations, analyzed simulation data, and wrote the paper. K.T. and K.Y. discussed all aspects of the work. Funding This work is supported in part by MEXT (Ministry of Education, Culture, Sports, Science and Technology) Grant-in-Aid for the Program for Leading Graduate Schools and the Keio University Doctorate Student Grant-in-Aid Program 2017. Notes The authors declare no competing financial interest.
Publisher Copyright:
© 2018 American Chemical Society.
PY - 2018/3/13
Y1 - 2018/3/13
N2 - Water dynamics is of predominant importance in life, and it plays a critical role in chemical and biological systems. Many studies have reported nonbulk and anomalous dynamics of water molecules; however, a general method to detect the anomalous dynamics is yet to be established. Here, we develop a detection approach for the anomalous dynamics of a water molecule. Using a time series of the dipole vector of a water molecule, our approach achieves single-molecule detection of the anomalous dynamics for all water molecules in the system. Moreover, our approach quantifies the anomalous dynamics of a water molecule, which enables users to compare between different systems. In addition to the applicability, our approach has computational efficiency because it never calculates interactions with any other molecules. Experiments on five different systems of molecular dynamics simulations illustrate that our approach successfully detects the change points of water-molecule dynamics. These results demonstrate that our approach is a useful tool and provides a better understanding of dynamics of water molecules.
AB - Water dynamics is of predominant importance in life, and it plays a critical role in chemical and biological systems. Many studies have reported nonbulk and anomalous dynamics of water molecules; however, a general method to detect the anomalous dynamics is yet to be established. Here, we develop a detection approach for the anomalous dynamics of a water molecule. Using a time series of the dipole vector of a water molecule, our approach achieves single-molecule detection of the anomalous dynamics for all water molecules in the system. Moreover, our approach quantifies the anomalous dynamics of a water molecule, which enables users to compare between different systems. In addition to the applicability, our approach has computational efficiency because it never calculates interactions with any other molecules. Experiments on five different systems of molecular dynamics simulations illustrate that our approach successfully detects the change points of water-molecule dynamics. These results demonstrate that our approach is a useful tool and provides a better understanding of dynamics of water molecules.
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U2 - 10.1021/acs.jctc.7b01104
DO - 10.1021/acs.jctc.7b01104
M3 - Article
C2 - 29357244
AN - SCOPUS:85044001261
SN - 1549-9618
VL - 14
SP - 1177
EP - 1185
JO - Journal of chemical theory and computation
JF - Journal of chemical theory and computation
IS - 3
ER -