Publisher Correction: IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split read analysis (Scientific Reports (2018) DOI: 10.1038/s41598-018-23978-z)

Daichi Shigemizu; Fuyuki Miya; Shintaro Akiyama; Shujiro Okuda; Keith A. Boroevich; Akihiro Fujimoto; Hidewaki Nakagawa; Kouichi Ozaki; Shumpei Niida; Yonehiro Kanemura; Nobuhiko Okamoto; Shinji Saitoh; Mitsuhiro Kato; Mami Yamasaki; Tatsuo Matsunaga; Hideki Mutai; Kenjiro Kosaki; Tatsuhiko Tsunoda

doi:10.1038/s41598-018-28698-y

Publisher Correction: IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split read analysis (Scientific Reports (2018) DOI: 10.1038/s41598-018-23978-z)

Daichi Shigemizu, Fuyuki Miya, Shintaro Akiyama, Shujiro Okuda, Keith A. Boroevich, Akihiro Fujimoto, Hidewaki Nakagawa, Kouichi Ozaki, Shumpei Niida, Yonehiro Kanemura, Nobuhiko Okamoto, Shinji Saitoh, Mitsuhiro Kato, Mami Yamasaki, Tatsuo Matsunaga, Hideki Mutai, Kenjiro Kosaki, Tatsuhiko Tsunoda

Center for Medical Genetics

Research output: Contribution to journal › Comment/debate › peer-review

Abstract

This Article contains an error in the Results section under the subheading 'Performance comparison among call methods using simulation data'. We found that when the insertions were ?2 bp length and contained repetitive sequence from the flanking region, de novo assembly (Inchworm) did not work well (Table S3)." should read: We found that when the insertions were ?25 bp length and contained repetitive sequence from the flanking region, de novo assembly (Inchworm) did not work well (Table S3).".

Original language	English
Article number	10367
Journal	Scientific reports
Volume	8
Issue number	1
DOIs	https://doi.org/10.1038/s41598-018-28698-y
Publication status	Published - 2018 Dec 1

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Shigemizu, D., Miya, F., Akiyama, S., Okuda, S., Boroevich, K. A., Fujimoto, A., Nakagawa, H., Ozaki, K., Niida, S., Kanemura, Y., Okamoto, N., Saitoh, S., Kato, M., Yamasaki, M., Matsunaga, T., Mutai, H., Kosaki, K., & Tsunoda, T. (2018). Publisher Correction: IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split read analysis (Scientific Reports (2018) DOI: 10.1038/s41598-018-23978-z). Scientific reports, 8(1), Article 10367. https://doi.org/10.1038/s41598-018-28698-y

Publisher Correction: IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split read analysis (Scientific Reports (2018) DOI: 10.1038/s41598-018-23978-z). / Shigemizu, Daichi; Miya, Fuyuki; Akiyama, Shintaro et al.
In: Scientific reports, Vol. 8, No. 1, 10367, 01.12.2018.

Research output: Contribution to journal › Comment/debate › peer-review

Shigemizu, D, Miya, F, Akiyama, S, Okuda, S, Boroevich, KA, Fujimoto, A, Nakagawa, H, Ozaki, K, Niida, S, Kanemura, Y, Okamoto, N, Saitoh, S, Kato, M, Yamasaki, M, Matsunaga, T, Mutai, H, Kosaki, K & Tsunoda, T 2018, 'Publisher Correction: IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split read analysis (Scientific Reports (2018) DOI: 10.1038/s41598-018-23978-z)', Scientific reports, vol. 8, no. 1, 10367. https://doi.org/10.1038/s41598-018-28698-y

Shigemizu D, Miya F, Akiyama S, Okuda S, Boroevich KA, Fujimoto A et al. Publisher Correction: IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split read analysis (Scientific Reports (2018) DOI: 10.1038/s41598-018-23978-z). Scientific reports. 2018 Dec 1;8(1):10367. doi: 10.1038/s41598-018-28698-y

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title = "Publisher Correction: IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split read analysis (Scientific Reports (2018) DOI: 10.1038/s41598-018-23978-z)",

abstract = "This Article contains an error in the Results section under the subheading 'Performance comparison among call methods using simulation data'. We found that when the insertions were ?2 bp length and contained repetitive sequence from the flanking region, de novo assembly (Inchworm) did not work well (Table S3).{"} should read: We found that when the insertions were ?25 bp length and contained repetitive sequence from the flanking region, de novo assembly (Inchworm) did not work well (Table S3).{"}.",

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T2 - IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split read analysis (Scientific Reports (2018) DOI: 10.1038/s41598-018-23978-z)

AU - Shigemizu, Daichi

AU - Miya, Fuyuki

AU - Akiyama, Shintaro

AU - Okuda, Shujiro

AU - Boroevich, Keith A.

AU - Fujimoto, Akihiro

AU - Nakagawa, Hidewaki

AU - Ozaki, Kouichi

AU - Niida, Shumpei

AU - Kanemura, Yonehiro

AU - Okamoto, Nobuhiko

AU - Saitoh, Shinji

AU - Kato, Mitsuhiro

AU - Yamasaki, Mami

AU - Matsunaga, Tatsuo

AU - Mutai, Hideki

AU - Kosaki, Kenjiro

AU - Tsunoda, Tatsuhiko

PY - 2018/12/1

Y1 - 2018/12/1

N2 - This Article contains an error in the Results section under the subheading 'Performance comparison among call methods using simulation data'. We found that when the insertions were ?2 bp length and contained repetitive sequence from the flanking region, de novo assembly (Inchworm) did not work well (Table S3)." should read: We found that when the insertions were ?25 bp length and contained repetitive sequence from the flanking region, de novo assembly (Inchworm) did not work well (Table S3).".

AB - This Article contains an error in the Results section under the subheading 'Performance comparison among call methods using simulation data'. We found that when the insertions were ?2 bp length and contained repetitive sequence from the flanking region, de novo assembly (Inchworm) did not work well (Table S3)." should read: We found that when the insertions were ?25 bp length and contained repetitive sequence from the flanking region, de novo assembly (Inchworm) did not work well (Table S3).".

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Publisher Correction: IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split read analysis (Scientific Reports (2018) DOI: 10.1038/s41598-018-23978-z)

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