TY - GEN
T1 - A 2.46M reads/s Genome Sequencing Accelerator using a 625 Processing-Element Array
AU - Wang, Zhehong
AU - Zhang, Tianjun
AU - Fujiki, Daichi
AU - Subramaniyan, Arun
AU - Wu, Xiao
AU - Yasuda, Makoto
AU - Miyoshi, Satoru
AU - Kawaminami, Masaru
AU - Das, Reetuparna
AU - Narayanasamy, Satish
AU - Blaauw, David
N1 - Publisher Copyright:
© 2020 IEEE.
PY - 2020/3
Y1 - 2020/3
N2 - We present an accelerator for seed-extension, a critical and computational intensive step in genome sequencing. The accelerator consists of a triangular array of 25×25 custom design processing elements implementing a string-independent automata. It achieves 2.46M reads/s, a 1800x performance improvement, and 27x smaller silicon footprint compared to a Xeon E5420.
AB - We present an accelerator for seed-extension, a critical and computational intensive step in genome sequencing. The accelerator consists of a triangular array of 25×25 custom design processing elements implementing a string-independent automata. It achieves 2.46M reads/s, a 1800x performance improvement, and 27x smaller silicon footprint compared to a Xeon E5420.
KW - ASIC
KW - DNA Sequencing
KW - seed-extension
UR - http://www.scopus.com/inward/record.url?scp=85084456224&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=85084456224&partnerID=8YFLogxK
U2 - 10.1109/CICC48029.2020.9075900
DO - 10.1109/CICC48029.2020.9075900
M3 - Conference contribution
AN - SCOPUS:85084456224
T3 - Proceedings of the Custom Integrated Circuits Conference
BT - 2020 IEEE Custom Integrated Circuits Conference, CICC 2020
PB - Institute of Electrical and Electronics Engineers Inc.
T2 - 2020 IEEE Custom Integrated Circuits Conference, CICC 2020
Y2 - 22 March 2020 through 25 March 2020
ER -