TY - JOUR
T1 - Metabolic Tug-of-War between Glycolysis and Translation Revealed by Biochemical Reconstitution
AU - Sato, Gaku
AU - Kinoshita, Saki
AU - Yamada, Takahiro G.
AU - Arai, Satoshi
AU - Kitaguchi, Tetsuya
AU - Funahashi, Akira
AU - Doi, Nobuhide
AU - Fujiwara, Kei
N1 - Publisher Copyright:
© 2024 American Chemical Society.
PY - 2024/5/17
Y1 - 2024/5/17
N2 - Inside cells, various biological systems work cooperatively for homeostasis and self-replication. These systems do not work independently as they compete for shared elements like ATP and NADH. However, it has been believed that such competition is not a problem in codependent biological systems such as the energy-supplying glycolysis and the energy-consuming translation system. In this study, we biochemically reconstituted the coupling system of glycolysis and translation using purified elements and found that the competition for ATP between glycolysis and protein synthesis interferes with their coupling. Both experiments and simulations revealed that this interference is derived from a metabolic tug-of-war between glycolysis and translation based on their reaction rates, which changes the threshold of the initial substrate concentration for the success coupling. By the metabolic tug-of-war, translation energized by strong glycolysis is facilitated by an exogenous ATPase, which normally inhibits translation. These findings provide chemical insights into the mechanism of competition among biological systems in living cells and provide a framework for the construction of synthetic metabolism in vitro.
AB - Inside cells, various biological systems work cooperatively for homeostasis and self-replication. These systems do not work independently as they compete for shared elements like ATP and NADH. However, it has been believed that such competition is not a problem in codependent biological systems such as the energy-supplying glycolysis and the energy-consuming translation system. In this study, we biochemically reconstituted the coupling system of glycolysis and translation using purified elements and found that the competition for ATP between glycolysis and protein synthesis interferes with their coupling. Both experiments and simulations revealed that this interference is derived from a metabolic tug-of-war between glycolysis and translation based on their reaction rates, which changes the threshold of the initial substrate concentration for the success coupling. By the metabolic tug-of-war, translation energized by strong glycolysis is facilitated by an exogenous ATPase, which normally inhibits translation. These findings provide chemical insights into the mechanism of competition among biological systems in living cells and provide a framework for the construction of synthetic metabolism in vitro.
KW - biochemical simulations
KW - bottom-up synthetic biology
KW - cell-free protein synthesis
KW - glycolysis
KW - resource allocation
UR - https://www.scopus.com/pages/publications/85192841581
UR - https://www.scopus.com/pages/publications/85192841581#tab=citedBy
U2 - 10.1021/acssynbio.4c00209
DO - 10.1021/acssynbio.4c00209
M3 - Article
C2 - 38717981
AN - SCOPUS:85192841581
SN - 2161-5063
VL - 13
SP - 1572
EP - 1581
JO - ACS Synthetic Biology
JF - ACS Synthetic Biology
IS - 5
ER -