TY - JOUR
T1 - Truncation effects of shift function methods in bulk water systems
AU - Takahashi, Kazuaki Z.
PY - 2013
Y1 - 2013
N2 - A reduction of the cost for long-range interaction calculation is essential for large-scale molecular systems that contain a lot of point charges. Cutoff methods are often used to reduce the cost of long-range interaction calculations. Molecular dynamics (MD) simulations can be accelerated by using cutoff methods; however, simple truncation or approximation of long-range interactions often offers serious defects for various systems. For example, thermodynamical properties of polar molecular systems are strongly affected by the treatment of the Coulombic interactions and may lead to unphysical results. To assess the truncation effect of some cutoff methods that are categorized as the shift function method, MD simulations for bulk water systems were performed. The results reflect two main factors, i.e., the treatment of cutoff boundary conditions and the presence/absence of the theoretical background for the long-range approximation.
AB - A reduction of the cost for long-range interaction calculation is essential for large-scale molecular systems that contain a lot of point charges. Cutoff methods are often used to reduce the cost of long-range interaction calculations. Molecular dynamics (MD) simulations can be accelerated by using cutoff methods; however, simple truncation or approximation of long-range interactions often offers serious defects for various systems. For example, thermodynamical properties of polar molecular systems are strongly affected by the treatment of the Coulombic interactions and may lead to unphysical results. To assess the truncation effect of some cutoff methods that are categorized as the shift function method, MD simulations for bulk water systems were performed. The results reflect two main factors, i.e., the treatment of cutoff boundary conditions and the presence/absence of the theoretical background for the long-range approximation.
KW - Electrostatic interactions
KW - Liquid water
KW - Long-range interactions
KW - Molecular-dynamics simulations
KW - Reaction field
UR - http://www.scopus.com/inward/record.url?scp=84884199522&partnerID=8YFLogxK
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U2 - 10.3390/e15083339
DO - 10.3390/e15083339
M3 - Article
AN - SCOPUS:84884199522
SN - 1099-4300
VL - 15
SP - 3249
EP - 3264
JO - Entropy
JF - Entropy
IS - 8
ER -